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 Research Expertise and Publications
 Research Publications
  2011 Research Publications
   Plant Energy Biology, ARC Centre of Excellence for

Plant Energy Biology, ARC Centre of Excellence for

Book Chapters

Glaser, E., Whelan, J.M. 2011, Protein Import into Plant Mitochondria in Plant Mitochondria, Springer, USA

Huang, S., Millar, A.H., Taylor, N.L. 2011, The Plant Mitochondrial Proteome Composition and Stress Response: Conservation and Divergence Between Monocots and Dicots in Plant Mitochondria, Springer, Dordrecht

Tanz, S.K., Small, I. 2011, In Silico Methods for Identifying Organellar and Suborganellar Targeting Peptides in Arabidopsis Chloroplast Proteins and for Predicting the Topology of Membrane Proteins in CHLOROPLAST RESEARCH IN ARABIDOPSIS, Humana Press (Springer), USA

Journal Articles

Chateigner-Boutin, A., Colas des Francs-Small, C., Delannoy, E., Kahlau, S.S., Tanz, S.K., Falcon De Longevialle, A.T.A., Fujii, S., Small, I. 2011, 'OTP70 is a pentatricopeptide repeat protein of the E subgroup involved in splicing of the plastid transcript rpoC1', The Plant Journal, 65, pp. 532-542.

Chateigner-Boutin, A-L:, Small, I. 2011, 'Organellar RNA editing', WIREs RNA, 2, July/August, pp. 493-506.

Clarke, M.W., Cooke, B., Hoad, K., Glendenning, P. 2011, 'Improved plasma free metadrenaline analysis requires mixed mode cation exchange solid-phase extraction prior to liquid chromatography tandem mass spectrometry detection', Annals of Clinical Biochemistry, 48, pp. 352-357.

Colas des Francs-Small, C., Kroeger, T, Zmudjak, M, Ostersetzer-Biran, O., Rahimi, N, Small, I., Barkan, A 2012, 'A PORR domain protein required for rpl2 and ccmFc intron splicing and for the biogenesis of c-type cytochromes in Arabidopsis mitochondria', The Plant Journal, 69, 6, pp. 996-1005.

Cousins, AB, Walker, BJ, Pracharoenwattana, I., Smith, S.M., Badger, M.R. 2011, 'Peroxisomal hydroxypyruvate reductase is not essential for photorespiration in Arabidopsis but its absence causes an increase in the stoichiometry of photorespiratory CO2 release', PHOTOSYNTHESIS RESEARCH, 108, pp. 91-100.

Creaney, J., Yeoman, D., Musk, A.W., De Klerk, N.H., Skates, S.J., Robinson, B.W. 2011, 'Plasma versus serum levels of osteopontin and mesothelin in patients with malignant mesothelioma - Which is best?', LUNG CANCER, 74, pp. 55-60.

Delannoy, E., Fujii, S., Colas des Francs-Small, C., Brundrett, M.C., Small, I. 2011, 'Rampant Gene Loss in the Underground Orchid Rhizanthella gardneri Highlights Evolutionary Constraints on Plastid Genomes', MOLECULAR BIOLOGY AND EVOLUTION, 28, 7, pp. 2077-2086.

Duncan, O., Taylor, N.L., Carrie, C.J., Eubel, H., Kubiszewski-Jakubiak, S., Zhang, B., Narsai, R., Millar, H., Whelan, J.M. 2011, 'Multiple Lines of Evidence Localize Signaling, Morphology, and Lipid Biosynthesis Machinery to the Mitochondrial Outer Membrane of Arabidopsis', PLANT PHYSIOLOGY, 157, pp. 1093-1113.

Estavillo, GM, Crisp, PA, Pornsiriwong, W, Wirtz, M, Collinge, D, Carrie, C.J., Giraud, E.J., Whelan, J.M., David, P, Javot, H, Brearley, C, Hell, R, Marin, E, Pogson, BJ 2011, 'Evidence for a SAL1-PAP Chloroplast Retrograde Pathway That Functions in Drought and High Light Signaling in Arabidopsis', The Plant Cell, 23, pp. 3992-4012.

Feher, K.M., Whelan, J.M., Muller, S 2011, 'Assessing Modularity Using a Random Matrix Theory Approach', STATISTICAL APPLICATIONS IN GENETICS AND MOLECULAR BIOLOGY, 10, 1, pp. 1-34.


Fujii, S., Small, I. 2011, 'The evolution of RNA editing and pentatricopeptide repeat genes', NEW PHYTOLOGIST, 191, pp. 37-47.

Fujii, S., Bond, C.S., Small, I. 2011, 'Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution', PNAS, 108, 4, pp. 1723-1728.

Giraud, E.J., Van Aken, O., Uggalla, V.K., Whelan, J.M. 2012, 'REDOX regulation of mitochondrial function in plants', Plant, Cell & Environment, 35, pp. 271-280.

Giraud, E.J., Ivanova, A., Gordon, CS, Whelan, J.M., Considine, M.J. 2012, 'Sulphur dioxide evokes a large scale reprogramming of the grape berry transcriptome associated with oxidative signalling and biotic defence responses', Plant, Cell & Environment, 35, pp. 405-417.

Gleason, C, Huang, S., Thatcher, L.F., Foley, R.C., Anderson, C.R., Carroll, A.J., Millar, A.H., Singh, K. 2011, 'Mitochondrial complex II has a key role in mitochondrial-derived reactive oxygen species influence on plant stress gene regulation and defense', PNAS, 108, 26, pp. 10768-10773.

Grassl, J., Taylor, N.L., Millar, A.H. 2011, 'Matrix-assisted laser desorption/ionisation mass spectrometry imaging and its development for plant protein imaging', PLANT METHODS, 7, 21, pp. 1-11.

Hammani, K., Gobert, A, Small, I., Giege, P 2011, 'A PPR protein involved in regulating nuclear genes encoding mitochondrial proteins?', PLANT SIGNALING AND BEHAVIOR, 6, 5, pp. 748-750.

Hammani, K., Colas des Francs-Small, C., Takenaka, M, Tanz, S.K., Okuda, K, Shikanai, T, Brennicke, A, Small, I. 2011, 'The Pentatricopeptide Repeat Protein OTP87 Is Essential for RNA Editing of nad7 and atp1 Transcripts in Arabidopsis Mitochondria', JOURNAL OF BIOLOGICAL CHEMISTRY, 286, 24, pp. 21361-21371.

Hammani, K., Gobert, A, Hleibieh, K, Choulier, L, Small, I., Giege, P 2011, 'An Arabidopsis Dual-Localized Pentatricopeptide Repeat Protein Interacts with Nuclear Proteins Involved in Gene Expression Regulation', The Plant Cell, 23, pp. 730-740.

Ito, J., Batth, T.S., Petzold, C.J., Redding-Johanson, A.M., Mukhopadhyay, A, Verboom, R.E., Meyer, E., Millar, A.H., Heazlewood, J.L. 2011, 'Analysis of the Arabidopsis Cytosolic Proteome Highlights Subcellular Partitioning of Central Plant Metabolism', JOURNAL OF PROTEOME RESEARCH, 10, pp. 1571-1582.

Jacoby, R.P., Taylor, N.L., Millar, A.H. 2011, 'The role of mitochondrial respiration in salinity tolerance', Trends in Plant Science, 16, 11, pp. 614-623.

Jia, L, Wu, Z, Hao, X, Carrie, C.J., Zheng, L, Whelan, J.M., Wu, Y, Wang, S, Wu, P, Mao, C 2011, 'Identification of a novel mitochondrial protein, short postembryonic roots 1 (SPR1), involved in root development and iron homeostasis in Oryza sativa', NEW PHYTOLOGIST, 189, pp. 843-855.

Joshi, H.J., Hirsch-Hoffman, M., Baerenfaller, K., Gruissem, W., Baginsky, S., Schmidt, R., Schulze, W.X., Sun, Q., van Wijk, K.J., Egelhofer, V., Wienkoop, S., Weckwerth, W., Bruley, C., Rolland, R., Toyoda, T., Nakagami, H., Jones, A.M., Briggs, S.P., Castleden, I.R., Tanz, S.K., Millar, A.H., Heazlewood, J.L. 2011, 'MASCP Gator: An Aggregation Portal for the Visualization of Arabidopsis Proteomics Data', PLANT PHYSIOLOGY, 155, pp. 259-270.

Keech, O. 2011, 'The conserved mobility of mitochondria during leaf senescence reflects differential regulation of the cytoskeletal components in Arabidopsis thalian', PLANT SIGNALING AND BEHAVIOR, 6, 1, pp. 147-150.

Keelan, J.A., Nitsos, I., Saito, M., Musk, G.C., Kemp, M.W., Timmins, M.A., Li, S., Yaegashi, N, Newnham, J.P. 2011, 'Maternal-amniotic-fetal distribution of macrolide antibiotics following intravenous, intramuscular, and intraamniotic administration in late pregnant sheep', AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY, 204, pp. 10-17.

King, M., Eubel, H., Millar, A.H., Baer, B. 2011, 'Proteins within the seminal fluid are crucial to keep sperm viable in the honeybee Apis mellifera', Journal of Insect Physiology, 57, pp. 409-414.

Kuhn, K., Carrie, C.J., Giraud, E.J., Wang, Y., Meyer, E., Narsai, R., Colas des Francs-Small, C., Zhang, B., Murcha, M.W., Whelan, J.M. 2011, 'The RCC1 family protein RUG3 is required for splicing of nad2 and complex I biogenesis in mitochondria of Arabidopsis thaliana', The Plant Journal, 67, pp. 1067-1080.

Kumari, M., Clarke, H.J., Colas des Francs-Small, C., Small, I., Khan, T.N., Siddique, K.H.M. 2011, 'Albinism does not correlate with biparental inheritance of plastid DNA in interspecific hybrids in Cicer species', PLANT SCIENCE, 180, pp. 628-633.

Lee, C.P., Eubel, H., O'Toole, N.J., Millar, A.H. 2011, 'Combining proteomics of root and shoot mitochondria and transcript analysis to define constitutive and variable components in plant mitochondria', PHYTOCHEMISTRY, 72, pp. 1092-1108.

Lowe, E.C., Simmons, L.W., Baer, B. 2011, 'Worker heterozygosity and immune response in feral and managed honeybees (Apis mellifera)', AUSTRALIAN JOURNAL OF ZOOLOGY, 59, pp. 73–78.

Meyer, E., Solheim, C.A., Tanz, S.K., Bonnard, G., Millar, A.H. 2011, 'Insights into the Composition and Assembly of the Membrane Arm of Plant Complex I through Analysis of Subcomplexes in Arabidopsis Mutant Lines', JOURNAL OF BIOLOGICAL CHEMISTRY, 286, 29, pp. 26081-26092.

Millar, H.H., Whelan, J.M., Soole, KL, Day, DA 2011, 'Organization and Regulation of Mitochondrial Respiration in Plants', ANNUAL REVIEW OF PLANT BIOLOGY, 62, pp. 79-104.

Narsai, R., Law, S.R., Carrie, C.J., Xu, L., Whelan, J.M. 2011, 'In-Depth Temporal Transcriptome Profiling Reveals a Crucial Developmental Switch with Roles for RNA Processing and Organelle Metabolism That Are Essential for Germination in Arabidopsis', PLANT PHYSIOLOGY, 157, pp. 1342-1362.

Narsai, R., Rocha, M, Geigenberger, P, Whelan, J.M., van Dongen, JT 2011, 'Comparative analysis between plant species of transcriptional and metabolic responses to hypoxia', NEW PHYTOLOGIST, 190, pp. 472-287.

Nelson, D., Scaffidi, A., Dun, EA, Waters, M.T., Flematti, G.R., Dixon, K.W., Beveridge, CA, Ghisalberti, E.L., Smith, S.M. 2011, 'F-box protein MAX2 has dual roles in karrikin and strigolactone signaling in Arabidopsis thaliana', PNAS, 108, pp. 8897-8902.

Poland, V., Eubel, H., King, M., Solheim, C.A., Millar, A.H., Baer, B. 2011, 'Stored sperm differs from ejaculated sperm by proteome alterations associated with energy metabolism in the honeybee Apis mellifera', MOLECULAR ECOLOGY, 20, pp. 2643-2654.

Purdy, S., Bussell, J.D., Nelson, D., Villadsen, D., Smith, S.M. 2011, 'A nuclear-localized protein, KOLD SENSITIVE-1, affects the expression of cold-responsive genes during prolonged chilling in Arabidopsis', JOURNAL OF PLANT PHYSIOLOGY, 168, pp. 263-269.

Qi, Y, Armbruster, U, Schmitz-Linneweber, C, Delannoy, E., Falcon De Longevialle, A.T.A., Ruhle, T, Small, I., Jahns, P, Leister, D 2012, 'Arabidopsis CSP41 proteins form multimeric complexes that bind and stabilize distinct plastid transcripts', JOURNAL OF EXPERIMENTAL BOTANY, 63, 3, pp. 1251-1270.

Shingaki-Wells, R.N., Huang, S., Taylor, N.L., Carroll, A.J., Zhou, W., Millar, A.H. 2011, 'Differential Molecular Responses of Rice and Wheat Coleoptiles to Anoxia Reveal Novel Metabolic Adaptations in Amino Acid Metabolism for Tissue Tolerance', PLANT PHYSIOLOGY, 156, pp. 1706-1724.

Shingaki-Wells, R.N., Huang, S., Taylor, N.L., Millar, H.H. 2011, 'Pursuing the identification of 02 deprivation survival mechanisms in plants related to selective mRNA translation, hormone-independent cellular elongation and preparation for the arrival of oxygen', PLANT SIGNALING AND BEHAVIOR, 6, 10, pp. 1612-1615.

Stürup, M., den Boer, S.P.A., Nash, D.R., Boomsma, J.J., Baer, B. 2011, 'Variation in male body size and reproductive allocation in the leafcutter ant Atta colombica: Estimating variance components and possible trade-offs', Insectes Sociaux, 58, pp. 47-55.

Tanz, S.K., Kilian, J, Johnsson, C, Apel, K, Small, I., Harter, K, Wanke, D, Pogson, B, Albrecht, V 2011, 'The SCO2 protein disulphide isomerase is required for thylakoid biogenesis and interacts with LCHB1 chlorophyll a/b binding proteins which affects chlorophyll biosynthesis in Arabidopsis seedlings', The Plant Journal, e-pub, DOI listed, pp. 1-12.

Taylor, N.L., Heazlewood, J.L., Millar, A.H. 2011, 'The Arabidopsis thaliana 2-D gel mitochondrial proteome: Refining the value of reference maps for assessing protein abundance, contaminants and post-translational modifications', Proteomics, 11, pp. 1720-1733.

Waters, M.T., Smith, S.M., Nelson, DC 2011, 'Smoke signals and seed dormancy', PLANT SIGNALLING AND BEHAVIOR, 6, 9, pp. 1418-1422.

Williams, C.P., Schueller, N., Thompson, C.A., van den Berg, M., Van Haren, S.D., Erdmann, R., Bond, C.S., Distel, B., Schliebs, W., Wilmanns, M., Stanley, W.A. 2011, 'The Peroxisomal Targeting Signal 1 in sterol carrier protein 2 is autonomous and essential for receptor recognition', BMC BIOCHEMISTRY, 12, pp. 8pp.

Wu, J, Wang, C, Zheng, L, Wang, L, Chen, Y, Whelan, J.M., Shou, H 2011, 'Ethylene is involved in the regulation of iron homeostasis by regulating the expression of iron-acquisition-related genes in Oryza sativa', JOURNAL OF EXPERIMENTAL BOTANY, 62, 2, pp. 667-674.

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