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 Research Expertise and Publications
 
 Research Publications
 
  2011 Research Publications
 
   Oceans Institute, UWA

Oceans Institute, UWA

Journal Articles

Agawin, N.S.R., Tovar-Sanchez, A., Stal, L.J., Alvarez, M., AGUSTI, S., Duarte, C. 2011, 'Low water column nitrogen fixation in the Mediterranean Sea: Basin-wide experimental evidence', AQUATIC MICROBIAL ECOLOGY, 64, pp. 135-147.

Aires, T., Marbà, N., Cunha, R.L., Kendrick, G.A., Walker, D.I., Serrão, E.A., Duarte, C., Arnaud-Haond, S. 2011, 'Evolutionary history of the seagrass genus Posidonia', Marine Ecology Progress Series, 421, pp. 117-130.

Antón, A., Cebrian, J., Heck, K.L., Duarte, C.M., Sheehan, K.L., Miller, M.-E.C., Foster, C.D. 2011, 'Decoupled effects (positive to negative) of nutrient enrichment on ecosystem services', ECOLOGICAL APPLICATIONS, 21, pp. 991-1009.

Arnaud-Haond, S., Arrieta, J.M., Duarte, C.M. 2011, 'Marine biodiversity and gene patents', SCIENCE, 331, pp. 1521-1522.

Brown, C.J., Schoeman, D.S., Sydeman, W.J., Brander, K., Buckley, L.B., Burrows, M., Duarte, C.M., Moore, P.J., Pandolfi, J.M., Poloczanska, E., Venables, W., Richardson, A.J. 2011, 'Quantitative approaches in climate change ecology', GLOBAL CHANGE BIOLOGY, 17, pp. 3697-3713.

Burrows, M.T., Schoeman, D.S., Buckley, L.B., Moore, P., Poloczanska, E.S., Brander, K.M., Brown, C., Bruno, J.F., Duarte, C.M., Halpern, B.S., Holding, J., Kappel, C.V., Kiessling, W., O'Connor, M.I., Pandolfi, J.M., Parmesan, C., Schwing, F.B., Sydeman, W.J., Richardson, A.J. 2011, 'The pace of shifting climate in marine and terrestrial ecosystems', SCIENCE, 334, pp. 652-655.

Cappo, M., Stowar, M., Syms, C., Johansson, C., Cooper, T. 2011, 'Fish-habitat associations in the region offshore from James price point - a rapid assessment using baited remote underwater video stations (BRUVS)', JOURNAL OF THE ROYAL SOCIETY OF WESTERN AUSTRALIA, 94, pp. 303-321.

Carstensen, J., Sánchez-Camacho, M., Duarte, C.M., Krause-Jensen, D., Marbà, N. 2011, 'Connecting the dots: Responses of coastal ecosystems to changing nutrient concentrations', ENVIRONMENTAL SCIENCE AND TECHNOLOGY : A WILEY INTERSCIENCE SERIES OF TEXT AND MONOGRAPHS, 45, pp. 9122-9132.

Cole, A.J., Lawton, R.J., Pratchett, M.S., Wilson, S.K. 2011, 'Chronic coral consumption by butterflyfishes', CORAL REEFS, 30, pp. 85-93.

Cooper, T.F., Lai, M., Ulstrup, K.E., Saunders, S.M., Flematti, G.R., Radford, B., van Oppen, M.J.H. 2011, 'Symbiodinium Genotypic and Environmental Controls on Lipids in Reef Building Corals', PLOS ONE, 6, 5, pp. 8pp.

Cooper, T.F., Berkelmans, R., Ulstrup, K.E., Weeks, S., Radford, B., Jones, A.M., Doyle, J., Canto, M., O'Leary, R.A., van Oppen, M.J.H. 2011, 'Environmental Factors Controlling the Distribution of Symbiodinium Harboured by the Coral Acropora millepora on the Great Barrier Reef', PLOS ONE, 6, 10, pp. 13pp.

Cooper, T.F., Ulstrup, K.E., Dandan, S.S., Heyward, A.J., Kuhl, M., Muirhead, A., O'Leary, R.A., Ziersen, B.E.F., Van Oppen, M.J.H. 2011, 'Niche specialization of reef-building corals in the mesophotic zone: metabolic trade-offs between divergent Symbiodinium types', PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 278, pp. 1840-1850.

Daw, T.M., Cinner, J.E., McClanahan, T.R., Graham, N.A.J., Wilson, S.K. 2011, 'Design Factors and Socioeconomic Variables Associated with Ecological Responses to Fishery Closures in the Western Indian Ocean', COASTAL MANAGEMENT, 39, pp. 412-424.

Duarte, C.M., Kennedy, H., Marbà, N., Hendriks, I. 2011, 'Assessing the capacity of seagrass meadows for carbon burial: Current limitations and future strategies', Ocean and Coastal Management, 2011, pp. 7pp.

Echeveste, P., AGUSTI-REQUENA, S., Dachs, J. 2011, 'Cell size dependence of additive versus synergetic effects of UV radiation and PAHs on oceanic phytoplankton', Environmental Pollution, 159, pp. 1307-1316.

Farmer, B.M., Wilson, S.K. 2011, 'Diet of finfish targeted by fishers in North West Australia and the implications for trophic cascades', ENVIRONMENTAL BIOLOGY OF FISHES, 91, pp. 71-85.

Ferrari, M.C.O., Dixson, D.L., Munday, P.L., McCormick, M.I., Meekan, M.G., Sih, A., Chivers, D.P. 2011, 'Intrageneric variation in antipredator responses of coral reef fishes affected by ocean acidification: implications for climate change projections on marine communities', GLOBAL CHANGE BIOLOGY, 17, pp. 2980-2986.

Field, I.C., Meekan, M.G., Speed, C.W., White, W., Bradshaw, C.J.A. 2011, 'Quantifying movement patterns for shark conservation at remote coral atolls in the Indian Ocean', CORAL REEFS, 30, pp. 61-71.

Fisher, R., Radford, B.T., Knowlton, N., Brainard, R.E., Michaelis, F.B., Caley, M.J. 2011, 'Global mismatch between research effort and conservation needs of tropical coral reefs', CONSERVATION LETTERS, 4, pp. 64-72.

Fisher, R., Knowlton, N., Brainard, R.E., Caley, M.J. 2011, 'Differences among Major Taxa in the Extent of Ecological Knowledge across Four Major Ecosystems', PLOS ONE, 6, 11, pp. 8pp.

Gagliano, M., Lema, A.K., Depczynski, M., Whalan, S. 2011, 'Use it and lose it: Lipofuscin accumulation in the midbrain of a coral reef fish', JOURNAL OF FISH BIOLOGY, 78, 2, pp. 659-666.

Garcias-Bonet, N., Sherman, T.D., Duarte, C.M., Marbà, N. 2011, 'Distribution and Pathogenicity of the Protist Labyrinthula sp. in western Mediterranean Seagrass Meadows', ESTUARIES AND COASTS, 34, pp. 1161-1168.

Geertz-Hansen, O., Montes, C., Duarte, C.M., Sand-Jensen, K., Marb√°, N., Grillas, P. 2011, 'Ecosystem metabolism in a temporary Mediterranean marsh (Donana National Park, SW Spain)', BIOGEOSCIENCES, 8, pp. 963-971.

Graham, N.A.J., Chabanet, P., Evans, R.D., Jennings, S., Letourneur, Y., Aaron Macneil, M., Mcclanahan, T.R., √Ėhman, M.C., Polunin, N.V.C., Wilson, S.K. 2011, 'Extinction vulnerability of coral reef fishes', Ecology Letters, 14, pp. 341.

Grist, E.P.M., Jackson, G.D., Meekan, M.G. 2011, 'Does a snapshot show the whole picture? Intrinsic limitations to growth inference of the short lived and fast growing', ENVIRONMENTAL BIOLOGY OF FISHES, 90, pp. 111-120.

Gutiérrez-Rodríguez, A., Latasa, M., Agustí, S., Duarte, C.M. 2011, 'Distribution and contribution of major phytoplankton groups to carbon cycling across contrasting conditions of the subtropical northeast Atlantic Ocean', Deep-Sea Research Part I: Oceanographic Research Papers, 58, pp. 1115-1129.

Hendriks, I.E., Cabanellas-Reboredo, M., Bouma, T.J., Deudero, S., Duarte, C.M. 2011, 'Seagrass Meadows Modify Drag Forces on the Shell of the Fan Mussel Pinna nobilis', ESTUARIES AND COASTS, 34, pp. 60-67.

Herrada, A., Eguiluz, V.M., Hernandez-Garcia, E., Duarte, C.M. 2011, 'Scaling properties of protein family phylogenies', BMC EVOLUTIONARY BIOLOGY, 11, pp. 155.

Hill, M., Allenby, A., Ramsby, B., Schoenberg, C., Hill, A. 2011, 'Symbiodinium diversity among host clionaid sponges from Caribbean and Pacific reefs: Evidence of heteroplasmy and putative host-specific symbiont lineages', MOLECULAR PHYLOGENETICS AND EVOLUTION, 59, pp. 81-88.

Hovey, R.K., Cambridge, M.L., Kendrick, G.A. 2011, 'Direct measurements of root growth and productivity in the seagrasses Posidonia australis and P. sinuosa', Limnology and Oceanography, 56, pp. 394-402.

Hu, W., O'Leary, R.A., Mengersen, K., Choy, S. 2011, 'Bayesian Classification and regression trees for predicting incidence of cryptosporidiosis', PLoS ONE, 6, pp. 8pp.

Jones, R.J. 2011, 'Spatial patterns of chemical contamination (metals, PAHs, PCBs, PCDDs/PCDFS) in sediments of a non-industrialized but densely populated coral atoll/small island state (Bermuda)', MARINE POLLUTION BULLETIN, 62, pp. 1362-1376.

Jones, R.J. 2011, 'ENVIRONMENTAL EFFECTS OF THE CRUISE TOURISM BOOM: SEDIMENT RESUSPENSION FROM CRUISE SHIPS AND THE POSSIBLE EFFECTS OF INCREASED TURBIDITY AND SEDIMENT DEPOSITION ON CORALS (BERMUDA)', BULLETIN OF MARINE SCIENCE, 87, 3, pp. 659-679.

Jones, R., Parsons, R., Watkinson, E., Kendell, D. 2011, 'Sewage contamination of a densely populated coral 'atoll' (Bermuda)', ENVIRONMENTAL MONITORING AND ASSESSMENT, 179, pp. 309-324.

Kuehl, K., Jones, R., Gibbs, D., Richardson, L. 2011, 'The roles of temperature and light in black band disease (BBD) progression on corals of the genus Diploria in Bermuda', JOURNAL OF INVERTEBRATE PATHOLOGY, 106, pp. 366-370.

Langlois, T.J., Radford, B.T., Van Niel, K.P., Meeuwig, J.J., Pearce, A.F., Rousseaux, C.S., Kendrick, G.A., Harvey, E.S. 2011, 'Consistent adundance distributions of marine fishes in an old, climatically buffered, infertile seascape', GLOBAL ECOLOGY AND BIOGEOGRAPHY, 2011, pp. 13pp.

Llabrés, M., AGUSTI, S., Herndl, G.J. 2011, 'Diel in situ picophytoplankton cell death cycles coupled with cell division', Journal of Phycology, 47, pp. 1247-1257.

Lough, J.M., Cooper, T.F. 2011, 'New insights from coral growth band studies in an era of rapid environmental change', EARTH-SCIENCE REVIEWS, 108, pp. 170-184.

Lo-Yat, A., Simpson, S.D., Meekan, M., Lecchini, D., Martinez, E., Galzin, R. 2011, 'Extreme climatic events reduce ocean productivity and larval supply in a tropical reef ecosystem', GLOBAL CHANGE BIOLOGY, 17, pp. 1695-1702.

Marotta, H., Duarte, C.M., Guimar√£es-Souza, B.A., Enrich-Prast, A. 2012, 'Synergistic control of CO2 emissions by fish and nutrients in a humic tropical lake', OECOLOGIA, 168, pp. 839-847.

Martini, K.I., Alford, M.H., Kunze, E., Kelly, S.M., Nash, J.D. 2011, 'Observations of internal tides on the Oregon continental slope', JOURNAL OF PHYSICAL OCEANOGRAPHY, 41, pp. 1772-1794.

McClanahan, T.R., Graham, N.A.J., MacNeil, M.A., Muthiga, N.A., Cinner, J.E., Bruggemann, J.H., Wilson, S.K. 2011, 'Critical thresholds and tangible targets for ecosystem-based management of coral reef fisheries', PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 108, pp. 17230-17233.

McLeod, E., Chmura, G.L., Bouillon, S., Salm, R., Björk, M., Duarte, C.M., Lovelock, C.E., Schlesinger, W.H., Silliman, B.R. 2011, 'A blueprint for blue carbon: Toward an improved understanding of the role of vegetated coastal habitats in sequestering CO 2', Frontiers in Ecology and the Environment, 9, 10, pp. 552-560.

Mellin, C., Delean, S., Caley, J., Edgar, G., Meekan, M., Pitcher, R., Przeslawski, R., Williams, A., Bradshaw, C. 2011, 'Effectiveness of Biological Surrogates for Predicting Patterns of Marine Biodiversity: A Global Meta-Analysis', PLOS ONE, 6, pp. 11pp.

Moalic, Y., Desbruyères, D., Duarte, C.M., Rozenfeld, A.F., Bachraty, C., Arnaud-Haond, S. 2012, 'Biogeography Revisited with Network Theory: Retracing the History of Hydrothermal Vent Communities', Systematic Biology, 61, 1, pp. 127-132.

Onton, K., Page, C.A., Wilson, S.K., Neale, S., Armstrong, S. 2011, 'Distribution and drivers of coral disease at Ningaloo reef, Indian Ocean', MARINE ECOLOGY-PROGRESS SERIES, 433, pp. 75-84.

Ooi, J.L.S., Kendrick, G.A., Van Niel, K.P., Affendi, A. 2011, 'Knowledge gaps in tropical Southeast Asian seagrass systems', Estuarine, Coastal and Shelf Science, 92, pp. 118-131.

Ooi, J.L.S., Kendrick, G.A., Van Niel, K.P. 2011, 'Effects of sediment burial on tropical ruderal seagrasses are moderated by clonal integration', Continental Shelf Research, 31, pp. 1945-1954.

O'Shea, O.R., Thums, M., van Keulen, M., Meekan, M. 2011, 'Bioturbation by stingrays at Ningaloo Reef, Western Australia', MARINE AND FRESHWATER RESEARCH, 63, 3, pp. 189-197.

Pratchett, MS, Hoey, AS, Wilson, S.K., Messmer, V, Graham, NAJ 2011, 'Changes in Biodiversity and Functioning of Reef Fish Assemblages following Coral Bleaching and Coral Loss', DIVERSITY, 3, pp. 424-452.

Renton, M., Airey, M.S., Cambridge, M.L., Kendrick, G.A. 2011, 'Modelling seagrass growth and development to evaluate transplanting strategies for restoration', Annals of Botany, 108, pp. 1213-1223.

Rivers, D.O., Kendrick, G.A., Walker, D.I. 2011, 'Microsites play an important role for seedling survival in the seagrass Amphibolis antarctica', Journal of Experimental Marine Biology and Ecology, 401, pp. 29-35.

Ruiz-Halpern, S., Duarte, C.M., Tovar-Sanchez, A., Pastor, M., Horstkotte, B., Lasternas, S., Agusti, S. 2011, 'Antarctic krill as a source of dissolved organic carbon to the Antarctic ecosystem', LIMNOLOGY AND OCEANOGRAPHY, 56, pp. 521.

Short, F.T., Polidoro, B., Livingstone, S.R., Carpenter, K.E., Bandeira, S., Bujang, J.S., Calumpong, H.P., Carruthers, T.J.B., Coles, R.G., Dennison, W.C., Erftemeijer, P.L.A., Fortes, M.D., Freeman, A.S., Jagtap, T.G., Kamal, A.H.M., Kendrick, G.A., Judson Kenworthy, W., La Nafie, Y.A., Nasution, I.M., Orth, R.J., Prathep, A., Sanciangco, J.C., Tussenbroek, B.V., Vergara, S.G., Waycott, M., Zieman, J.C. 2011, 'Extinction risk assessment of the world's seagrass species', Biological Conservation, 144, pp. 1961-1971.

Simpson, S.D., Radford, A.N., Tickle, E.J., Meekan, M.G., Jeffs, A.G. 2011, 'Adaptive Avoidance of Reef Noise', PLOS ONE, 6, pp. 5pp.

Smale, D.A., Kendrick, G.A., Wernberg, T. 2011, 'Subtidal macroalgal richness, diversity and turnover, at multiple spatial scales, along the southwestern Australian coastline', Estuarine, Coastal and Shelf Science, 91, pp. 224-231.

Speed, C.W., Meekan, M.G., Field, I.C., McMahon, C.R., Stevens, J.D., McGregor, F., Huveneers, C., Berger, Y., Bradshaw, C.J.A. 2011, 'Spatial and temporal movement patterns of a multi-species coastal reef shark aggregation', MARINE ECOLOGY-PROGRESS SERIES, 429, pp. 261-275.

Steckbauer, A., Duarte, C.M., Carstensen, J., Vaquer-Sunyer, R., Conley, D.J. 2011, 'Ecosystem impacts of hypoxia: Thresholds of hypoxia and pathways to recovery', Environmental Research Letters, 6, pp. 12pp.

Tillett, B.J., Meekan, M.G., Parry, D., Munksgaard, N., Field, I.C., Thorburn, D., Bradshaw, C.J.A. 2011, 'Decoding fingerprints: elemental composition of vertebrae correlates to age-related habitat use in two morphologically similar sharks', MARINE ECOLOGY-PROGRESS SERIES, 434, pp. 133-142.

Tillett, B.J., Meekan, M.G., Field, I.C., Hua, Q., Bradshaw, C.A.J. 2011, 'Similar life history traits in bull (Carcharinus leucas) and pig-eye (C. amboinensis) sharks', MARINE AND FRESHWATER RESEARCH, 62, pp. 850-860.

Ulstrup, K.E., Kuhl, M., van Oppen, M.J.H., Cooper, T.F., Ralph, P.J. 2011, 'Variation in photosynthesis and respiration in geographically distinct populations of two reef-building coral species', AQUATIC BIOLOGY, 12, pp. 241-248.

van Oppen, M.J.H., Bongaerts, P., Underwood, J.N., Peplow, L.M., Cooper, T.F. 2011, 'The role of deep reefs in shallow reef recovery: an assessment of vertical connectivity in a brooding coral from west and east Australia', MOLECULAR ECOLOGY, 20, pp. 1647-1660.

Vaquer-Sunyer, R., Duarte, C.M. 2011, 'Temperature effects on oxygen thresholds for hypoxia in marine benthic organisms', GLOBAL CHANGE BIOLOGY, 17, pp. 1788-1797.

Varela-Alvarez, E., Glenn, T.C., Serrao, E.A., Duarte, C.M., Martinez-Daranas, B., Valero, M., Marba, N. 2011, 'Dinucleotide microsatellite markers in the genus Caulerpa', JOURNAL OF APPLIED PHYCOLOGY, 23, pp. 715-719.

Varela-Alvarez, E., Rindi, F., Cavas, L., Serrao, E.A., Duarte, C.M., Marba, N. 2011, 'Molecular identification of the tropical seagrass Halophila stipulacea from Turkey', CAHIERS DE BIOLOGIE MARINE, 52, pp. 227-232.

Vianna, G.M., Meekan, M.G., Pannell, D.J., Marsh, S.P., Meeuwig, J.J. 2012, 'Socio-economic value and community benefits from shark-diving tourism in Palau: A sustainable use of reef shark populations', BIOLOGICAL CONSERVATION, 145, pp. 267-277.

Wernberg, T., Russell, B.D., Moore, P.J., Ling, S.D., Smale, D.A., Campbell, A., Coleman, M.A., Steinberg, P.D., Kendrick, G.A., Connell, S.D. 2011, 'Impacts of climate change in a global hotspot for temperate marine biodiversity and ocean warming', Journal of Experimental Marine Biology and Ecology, 400, pp. 7-16.

Wernberg, T., Thomsen, M.S., Tuya, F., Kendrick, G.A. 2011, 'Biogenic habitat structure of seaweeds change along a latitudinal gradient in ocean temperature', Journal of Experimental Marine Biology and Ecology, 400, pp. 264-271.

White, K.S., Westera, M.B., Kendrick, G.A. 2011, 'Spatial patterns in fish herbivory in a temperate Australian seagrass meadow', Estuarine, Coastal and Shelf Science, 93, pp. 366-374.

Other Publications

Kelly, S.M., Nash, J.D. 2011, 'Reply to comment by T. Gerkema on ‚ÄúInternal-tide energy over topography‚ÄĚ', JOURNAL OF GEOPHYSICAL RESEARCH, 116, pp. C09002.

Wassmann, P., Duarte, C.M., Agusti, S., Sejr, M.K. 2011, 'Footprints of climate change in the Arctic marine ecosystem', GLOBAL CHANGE BIOLOGY, 17, pp. 1235-1249.

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