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 Research Expertise and Publications
 Research Publications
  2011 Research Publications
   Natural and Agricultural Science Office, Faculty of

Natural and Agricultural Science Office, Faculty of

Book Chapters

Kaczmarek, M., Nelson, M.N., Cowling, W.A. 2011, Molecular mapping of complex traits in Genetics, Genomics and Breeding of Vegetable Brassicas, Science Publishers Inc, New Hamshire

O'Donnell, A.G., Jenkins, S.N., Whiteley, A.S. 2011, RNA-radioisotope probing for studying carbon metabolism in soils in Stable Isotope Probing and Related Technologies, ASM Press, Washington, DC

Journal Articles

Adhikari, K., Buirchell, B., Yan, G., Sweetingham, M. 2011, 'Two complementary dominant genes control flowering time in albus lupin (Lupinus albus L.)', Plant Breeding, 130, pp. 496-499.

Alghamdi, S.S., Al-Faifi, S.A., Migdadi, H.M., Ammar, M.H., Siddique, K.H.M. 2011, 'Inter-simple sequence repeat (ISSR)-based diversity assessment among faba bean genotypes', CROP AND PASTURE SCIENCE, 62, pp. 755-760.

Anwar, F., Alghamdi, S.S., Ammar, M.H., Siddique, K.H.M. 2011, 'An efficient in vitro regeneration protocol for faba bean (vicia faba L.)', Journal of Medicinal Plant Research, 5, pp. 6460-6467.

Berger, J.D., Milroy, S.P., Turner, N.C., Siddique, K.H.M., Imtiaz, M., Malhotra, R. 2011, 'Chickpea evolution has selected for contrasting phenological mechanisms among different habitats', EUPHYTICA, 180, pp. 1-15.

Bramley, H., Tyerman, S.D., Turner, D.W., Turner, N.C. 2011, 'Root growth of lupins is more sensitive to waterlogging than wheat', FUNCTIONAL PLANT BIOLOGY, 38, pp. 910-918.

Brennan, R.F., Bolland, M.D.A. 2011, 'Foliar spray experiments identify no boron deficiency but molybdenum and manganese deficiency for canola grain production on acidified sandy gravel soils in Southwestern Australia', Journal of Plant Nutrition, 34, pp. 1186-1197.

Chen, S., Nelson, M.N., Ch`evre, A., Jenczewski, E., Li, Z., Mason, A.S., Meng, J., Plummer, J.A., Pradhan, A., Siddique, K.H.M., Snowdon, R.J., Yan, G., Zhou, W., Cowling, W.A. 2011, 'Trigenomic bridges for Brassica improvement', CRITICAL REVIEWS IN PLANT SCIENCES, 30, pp. 524-547.

Chen, Y.L., Dunbabin, V.M., Postma, J.A., Diggle, A.J., Palta, J.A., Lynch, J.P., Siddique, K.H.M., Rengel, Z. 2011, 'Phenotypic variability and modelling of root structure of wild Lupinus angustifolius genotypes', PLANT AND SOIL, 348, pp. 345-364.

Chen, Y., Dunbabin, V.M., Diggle, A.J., Siddique, K.H.M., Rengel, Z. 2011, 'Development of a novel semi-hydroponic phenotyping system for studying root architecture', Functional Plant Biology, 38, pp. 355-363.

Clarke, H.J., Kumari, M., Khan, T.N., Siddique, K.H.M. 2011, 'Poorly formed chloroplasts are barriers to interspecific hybridization in chickpea following in vitro embryo rescue', PLANT CELL TISSUE AND ORGAN CULTURE, 106, pp. 465-473.

Clarke, G.P.Y., Stefanova, K.T. 2011, 'Optimal design for early-generation plant-breeding trials with unreplicated or partially replicated test lines', AUSTRALIAN & NEW ZEALAND JOURNAL OF STATISTICS, 53, pp. 461-480.

Crawford, A.C., Stefanova, K., Lambe, W., McLean, R., Wilson, R., Barclay, I., Francki, M.G. 2011, 'Functional relationships of phytoene synthase 1 alleles on chromosome 7A controlling flour colour variation in selected Australian wheat genotypes', THEORETICAL AND APPLIED GENETICS, 123, pp. 95-108.

Croser, J.S., Lulsdorf, M.M., Grewal, R.K., Usher, K.M., Siddique, K.H.M. 2011, 'Isolated microspore culture of chickpea (Cicer arietinum L.): induction of androgensis and cytological analysis of early haploid divisions', IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-PLANT, 47, pp. 357-368.

Dempster, D.N., Gleeson, D.B., Solaiman, Z.M., Jones, D.L., Murphy, D.V. 2012, 'Decreased soil microbial biomass and nitrogen mineralisation with Eucalyptus biochar addition to a coarse textured soil', Plant and Soil, 354, pp. 311-324.

Eshraghi, L., Aryamanesh, N., Anderson, J.P., Shearer, B, McComb, J.A., Hardy, G.E.S.J., O'Brien, P.A. 2011, 'A quantitative PCR assay for accurate in planta quantification of the necrotrophic pathogen Phytophthora cinnamomi', EUROPEAN JOURNAL OF PLANT PATHOLOGY, 131, pp. 419-430.

Eshraghi, L., Anderson, J.P., Aryamanesh, N., Shearer, B, McComb, J., Hardy, G.E.S.J., O'Brient, P.A. 2011, 'Phosphite primed defence responses and enhanced expression of defence genes in Arabidopsis thaliana infected with Phytophthora cinnamomi', PLANT PATHOLOGY, 60, pp. 1086 -1095.

Fang, X-W., Turner, N.C., Li, F-M., Siddique, K.H.M. 2011, 'An early transient water deficit reduces flower number and pod production but increases seed size in chickpea (Cicer arietinum L.)', CROP AND PASTURE SCIENCE, 62, pp. 481-487.

Farooq, M., Siddique, K.H.M., Rehman, H, Aziz, T, Lee, D.J., Wahid, A 2011, 'Rice direct seeding: Experiences, challenges and opportunities', SOIL & TILLAGE RESEARCH, 111, pp. 87-98.

Farooq, M, Jabran, K.A., Cheema, Z.A., Wahid, A, Siddique, K.H.M. 2011, 'Role of allelopathy in agricultural pest management', PEST MANAGEMENT SCIENCE, 67, pp. 493-506.

Farooq, M., Bramley, H., Palta, J.A., Siddique, K.H.M. 2011, 'Heat stress in wheat during reproductive and grain-filling phases', CRITICAL REVIEWS IN PLANT SCIENCES, 30, pp. 491-507.

Farooq, M., Flower, K.C., Jabran, K., Wahid, A., Siddique, K.H.M. 2011, 'Crop yield and weed management in rainfed conservation agriculture', SOIL & TILLAGE RESEARCH, 117, pp. 172-183.

Ghamkhar, K., Isobe, S., Nichols, P.G.H., Faithfull, T., Ryan, M.H., Snowball, R., Sato, S., Appels, R. 2011, 'The first genetic maps for subterranean clover (Trifolium subterraneum L.) and comparative genomics with T. pratense L. and Medicago truncatula Gaertn. to identify new molecular markers for breeding', Molecular Breeding, 1, pp. 1.

Hopkins, D.W., Waite, I.S., O'Donnell, A.G. 2011, 'Microbial biomass, organic matter mineralization and nitrogen in soils from long-term experimental grassland plots (Palace Leas meadow hay plots, UK)', European Journal of Soil Science, 62, pp. 95-104.

Hussain, S.S., Ali, M., Ahmad, M., Siddique, K.H.M. 2011, 'Polyamines: Natural and engineered abiotic and biotic stress tolerance in plants', BIOTECHNOLOGY ADVANCES, 29, pp. 300-311.

Jiang, C., Ramchiary, N., Ma, Y., Jin, M., Feng, J., Li, R., Wang, H., Long, Y., Choi, S.R., Zhang, C., Cowling, W.A., Park, B.S., Lim, Y.P., Meng, J. 2011, 'Structural and functional comparative mapping between the Brassica A genomes in allotetraploid Brassica napus and diploid Brassica rapa', THEORETICAL AND APPLIED GENETICS, 123, pp. 927-941.

Krishnamurthy, L., Turner, N.C., Gaur, P.M., Upadhyaya, H.D., Varshney, R.K., Siddique, K.H.M., Vadez, V. 2011, 'Consistent variation across soil types in salinity resistance of a diverse range of chickpea (Cicer arietinum L.) genotypes', JOURNAL OF AGRONOMY & CROP SCIENCE, 197, pp. 214-227.

Kumari, M., Clarke, H.J., Colas des Francs-Small, C., Small, I., Khan, T.N., Siddique, K.H.M. 2011, 'Albinism does not correlate with biparental inheritance of plastid DNA in interspecific hybrids in Cicer species', PLANT SCIENCE, 180, pp. 628-633.

Ma, Q., Rengel, Z., Siddique, K.H.M. 2011, 'Wheat and white lupin differ in root proliferation and phosphorus use efficiency under heterogeneous soil P supply', CROP & PASTURE SCIENCE, 62, pp. 467-473.

Mason, A.S., Nelson, M.N., Yan, G., Cowling, W.A. 2011, 'Production of viable male unreduced gametes in Brassica interspecific hybrids is genotype specific and stimulated by cold temperatures', BMC Plant Biology, 11, pp. 1-13.

Mason, A.S., Nelson, M.N., Castello, M.-C., Yan, G., Cowling, W.A. 2011, 'Genotypic effects on the frequency of homoeologous and homologous recombination in Brassica napus × B. carinata hybrids', Theoretical and Applied Genetics, 122, pp. 543-553.

Mason, A.S., Yan, G., Cowling, W.A., Nelson, M. 2012, 'A new method for producing allohexaploid Brassica through unreduced gametes', Euphytica, 11 October 2011, pp. 11pp.

Pande, S., Sharma, M., Gaur, P.M., Tripathi, S., Kaur, L., Basandrai, A., Khan, T.N., Gowda, C.L.L., Siddique, K.H.M. 2011, 'Development of screening techniques and identification of new sources of resistance to Ascochyta blight disease of chickpea', AUSTRALASIAN PLANT PATHOLOGY, 40, pp. 149-156.

Pang, J., Tibbett, M., Denton, M.D., Lambers, H., Siddique, K.H.M., Ryan, M.H. 2011, 'Soil phosphorus supply affects nodulation and N:P ratio in 11 perennial legume seedlings', CROP AND PASTURE SCIENCE, 62, pp. 992-1001.

Pang, J., Yang, J, Ward, P., Siddique, K.H.M., Lambers, H., Tibbett, M., Ryan, M. 2011, 'Contrasting responses to drought stress in herbaceous perennial legumes', PLANT AND SOIL, 348, pp. 299-314.

Popluechai, S, Froissard, M, Jolivet, P, Breviario, D, Gatehouse, A.M.R., O'Donnell, A.G., Chardot, T, Kohli, A 2011, 'Jatropha curcas oil body proteome and oleosins: L-form JcOle3 as a potential phylogenetic marker', PLANT PHYSIOLOGY AND BIOCHEMISTRY, 49, pp. 352-356.

Pradhan, A., Nelson, M.N., Plummer, J.A., Cowling, W.A., Yan, G. 2011, 'Characterization of Brassica nigra collections using simple sequence repeat markers reveals distinct groups associated with geographical location, and frequent mislabelling of species identity', Genome, 54, pp. 50-63.

Qi, B., Zhao, C., Youn, E., Nansen, C. 2011, 'Use of weighting algorithms to improve traditional support vector machine based classifications of reflectance data', OPTICS EXPRESS, 19, pp. 26816-26826.

Samineni, S., Gaur, P.M., Colmer, T.D., Krishnamurthy, L., Vadez, V., Siddique, K.H.M. 2011, 'Estimation of genetic components of variation for salt tolerance in chickpea using generation mean analysis', EUPHYTICA, 182, pp. 73-86.

Samineni, S., Siddique, K.H.M., Gaur, P.M., Colmer, T.D. 2011, 'Salt sensitivity of the vegetative and reproductive stages in chickpea (Cicer arietinum L.): Podding is a particularly sensitive stage', ENVIRONMENTAL AND EXPERIMENTAL BOTANY, 71, pp. 260-268.

Siddique, K.H.M., Johansen, C., Turner, N.C., Jeuffroy, M.H., Hashem, A, Sakar, D, Gan, Y, Alghamdi, S.S. 2012, 'Innovations in agronomy for food legumes. A review', AGRONOMY FOR SUSTAINABLE DEVELOPMENT, 32, pp. 45-64.

Supaphol, S., Jenkins, S.N., Intomo, P., Waite, I.S., O'Donnell, A.G. 2011, 'Microbial community dynamics in mesophilic anaerobic co-digestion of mixed waste', Bioresource Technology, 102, pp. 4021-4027.

Takahira, J., Cousin, A., Nelson, M.N., Cowling, W.A. 2011, 'Improvement in efficiency of microspore culture to produce doubled haploid canola (Brassica napus L.) by flow cytometry', Plant Cell, Tissue and Organ Culture, 104, pp. 51-59.

Tibbett, M., George, S.J., Davie, A., Barron, A., Milton, N., Greenwood, P.F. 2011, 'Just Add Water and Salt: the Optimisation of Petrogenic Hydrocarbon Biodegradation in Soils from Semi-arid Barrow Island, Western Australia', WATER AIR AND SOIL POLLUTION, 216, pp. 513-525.

Tonkin, Z.D., King, A.J., Robertson, A.I., Ramsey, D.S.L. 2011, 'Early fish growth varies in response to components of the flow regime in a temperate floodplain river', FRESHWATER BIOLOGY, 56, pp. 1769-1782.

Turner, N.C., Molyneux, N., Yang, S., Xiong, Y., Siddique, K.H.M. 2011, 'Climate change in south-west Australia and north-west China: challenges and opportunities for crop production', CROP AND PASTURE SCIENCE, 62, pp. 445-456.

Vadez, V, Krishnamurthy, L., Thudi, M., Anuradha, C., Colmer, T.D., Turner, N.C., Siddique, K.H.M., Gaur, P.M., Varshney, R.K. 2012, 'Assessment of ICCV 2 × JG 62 chickpea progenies shows sensitivity of reproduction to salt stress and reveals QTL for seed yield and yield components', MOLECULAR BREEDING, June, pp. 13pp.

Vessal, S., Palta, J.A., Atkins, C.A., Siddique, K.H.M. 2012, 'Development of an assay to evaluate differences in germination rate among chickpea genotypes under limited water content', Functional Plant Biology, 39, pp. 60-70.

Zhao, X., Li, P., Siddique, K.H.M., Turner, N.C., Li, F., Yan, G., Mo, F., Xiong, Y. 2011, 'Arid agricultural ecology in response to global change: Overview on young scholar forum of the 2nd international workshop on EAM', ACTA ECOLOGICA SINICA, 31, 9, pp. 2356-2364.

Conference Publications

Dunbabin, V.M., Airey, M., Diggle, A., Renton, M., Rengel, Z., Armstrong, R., Chen, Y., Siddique, K.H.M. 2011, 'Simulating the interaction between plant roots, soil water and nutrient flows and barriers and objects in soil using ROOTMAP', 19th International Congress on Modelling and Simulation, Australia, MODSIM2011, pp. 975-981.

Smith, H., Boruff, B. 2011, 'Recovery from the storm: resilience and the role of community capital in long-term disaster recovery in regional Western Australia', State of Australian Cities National Conference, Melbourne, Australia, 1, pp. n/a.

Stefanova, K.T. 2011, 'Measuring Efficiency of Trial Designs with Unreplicated or Partially Replicated Test Lines', 26th International Workshop on Statistical Modelling, Spain, 1, pp. 577-580.

Other Publications

Anderson, J.P., Singh, K.B. 2011, 'Interactions of Arabidopsis and M. truncatula with the same pathogens differ in dependence on ethylene and ethylene response factors', Plant Signaling and Behaviour, 6, pp. 551-552.

Aryamanesh, N., Al-Subhi, A.M., Snowball, R., Yan, G., Siddique, K.H.M. 2011, 'First Report of Bituminaria Witches'-Broom in Australia Caused by a 16SrII Phytoplasma', PLANT DISEASE, 95, pp. 226.

Banga, S., Kaur, G., Khosla, G., Salisbury, P., Wratten, N., Burton, W., Singh, D., Cowling, W.A. 2011, 'Germplasm diversity and heterosis in oilseed rape (Brassica napus L.)', Sustainable Development in Cruciferous Oilseed Crops Production, United States, 2, pp. 8-10.

Chen, S., Nelson, M., Ghamkhar, K., Cowling, W.A. 2011, 'Genetic diversity and distinctiveness revealed by SSR markers among rapeseed (Brassica npaus L.) genotypes from Australia, China and India', Sustainable Development in Cruciferous Oilseed Crops Production, United States, 2, pp. 248-252.

Cowling, W.A. 2011, 'Genetic diversity in canola for changing environments', Sustainable Development in Cruciferous Oilseed Crops Production, United States, 2, pp. 243-246.

Li, F., Siddique, K.H.M., Turner, N.C., Ouyang, Z., Yan, G., Xiong, Y. 2011, 'Sustainability of agricultural ecosystems in arid regions in response to climate change', ACTA ECOLOGICA SINICA, 31, 9, pp. I-II.

Li, P., Cheng, Z., Siddique, K.H.M., Turner, N.C., Li, F., Yan, G., Xiong, Y. 2011, 'Overview on the 2nd international workshop on ecosystem assessment and management (EAM)', ACTA ECOLOGICA SINICA, 31, 9, pp. 2349-2355.

Toker, C., Canci, H., Siddique, K.H.M. 2011, 'Noninfectious disorders: Nutrient disorders', Compendium of Chickpea and Lentil Diseases and Pests, pp. 126-131.

Turner, N.C., Li, F., Xiong, Y., Siddique, K.H.M. 2011, 'Cimate change and agricultural ecosystem management in dry areas', CROP AND PASTURE SCIENCE, 62, pp. i-ii.

Turner, N.C., Li, F.-M., Xiong, Y.-C., Siddique, K.H.M. 2011, 'Agricultural ecosystem management in dry areas: Challenges and solutions', PLANT AND SOIL, 347, pp. 1-6.

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