Plant Energy Biology, ARC Centre for

Journal Articles

Armstrong, A.F., Badger, M.R., Day, D.A., Barthet, M.M., Smith, P.M.C., Millar, A.H., Whelan, J.M. and Atkin, O.K. Dynamic changes in the mitochondrial electron transport chain underpinning cold acclimation of leaf respiration, Plant, Cell and Environment, 31: pp 1156-1169 (2008)

Carrie, C.J., Kuehn, K., Murcha, M.W., Duncan, O.R., Small, I., O'Toole, N.J. and Whelan, J.M. Approaches to defining dual-targeted proteins in Arabidopsis, The Plant Journal, doi: 10.1111/j.1365-313X.2008.: (2008)

Carrie, C.J., Murcha, M.W., Kuehn, K., Duncan, O.R., Barthet, M., Smith, P.M., Eubel, H., Meyer, E., Day, D.A., Millar, A.H. and Whelan, J.M. Type II NAD(P)H dehydrogenases are targeted to mitochondria and chloroplasts or peroxisomes in Arabidopsis thaliana, FEBS letters, 582: pp 3073-3079 (2008)

Carroll, A.J., Heazlewood, J.L., Ito, J. and Millar, A.H. Analysis of the Arabidopsis Cytosolic Ribosome Proteome Provides Detailed Insights into Its Components and Their Post-translational Modification, Molecular & Cellular Proteomics, 7: pp 347-369 (2008)

Chateigner-Boutin, A., Ramos-Vega, M., Guevara-Garcia, A., Andres, C., de la Luz Gutierrez-Nava, M., Delannoy, E., Jiminez, L.F., Lurin, C., Small, I. and Leon, P. CLB19, a pentatricopeptide repeat protein required for editing of rpoA and clpP chloroplast transcripts, The Plant Journal, 56: pp 590-602 (2008)

Cousins, A.B., Pracharoenwattana, I., Zhou, W., Smith, S.M. and Badger, M.R. Peroxisomal Malate Dehydrogenase Is Not Essential for Photorespiration in Arabidopsis But Its Absence Causes an Increase in the Stoichiometry of Photorespiratory CO2 Release, Plant Physiology, 148: pp 786-795 (2008)

den Boer, S.P.A., Boomsma, J.J. and Baer, B. Seminal fluid enhances sperm viability in the leafcutter ant Atta colombica, BEHAVIORAL ECOLOGY AND SOCIOBIOLOGY, 62:12, pp 1843-1849 (2008)

Eubel, H., Meyer, E., Taylor, N.L., Bussell, J.D., O'Toole, N.J., Heazlewood, J.L., Castleden, I.R., Small, I., Smith, S.M. and Millar, A.H. Novel Proteins, Putative Membrane Transporters, and an Integrated Metabolic Network Are Revealed by Quantitative Proteomic Analysis of Arabidopsis Cell Culture Peroxisomes, Plant Physiology, 148: pp 1809-1829 (2008)

Falcon de Longevialle, A., Hendrickson, L., Taylor, N.L., Delannoy, E., Lurin, C., Millar, A.H. and Small, I. The pentatricopeptide repeat gene OTP51 with two LAGLIDADG motifs is required for the cis-splicing of plastid ycf3 intron 2 in Arabidopsis thaliana, The Plant Journal, 56: pp 157-168 (2008)

Fulton, D.C., Stettler, M., Mettler, T., Vaughan, C.K., Li, J., Francisco, P., Gill, M., Reinhold, H., Eicke, S., Messerli, G., Dorken, G., Halliday, K., Smith, A.M., Smith, S.M. and Zeeman, S.C. beta-AMYLASE4, a Noncatalytic Protein Required for Starch Breakdown, Acts Upstream of Three Active beta-Amylases in Arabidopsis Chloroplasts, The Plant Cell, 20: pp 1040-1058 (2008)

Garmier, M., Carroll, A.J., Delannoy, E., Vallet, C., Day, D.A., Millar, A.H. and Small, I. Complex I Dysfunction Redirects Cellular and Mitochondrial Metabolism in Arabidopsis, Plant Physiology, 148: pp 1324-1341 (2008)

Giraud, E.J., Ho, L., Clifton, R.S., Carroll, A.J., Estavillo, G., Tan, Y.F., Howell, K.A., Ivanova, A., Pogson, B.J., Millar, A.H. and Whelan, J.M. The Absence of ALTERNATIVE OXIDASE1a in Arabidopsis Results in Acute Sensitivity to Combined Light and Drought Stress, Plant Physiology, 147: pp 595-610 (2008)

Gregory, B.D., O'Malley, R.C., Lister, R., Urich, M.A., Tonti-Filippini, J.S., Chen, H., Millar, A.H. and Ecker, J.R. A Link between RNA Metabolism and Silencing Affecting Arabidopsis Development, Developmental Cell, 14:6, pp 854-866 (2008)

Heazlewood, J.L., Durek, P., Hummel, J., Selbig, J., Weckwerth, W., Walther, D. and Schulze, W.X. PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor, Nucleic Acids Research, 36:D1015-D1021, p doi:10.1093/nar/gkm812 (2008)

Ho, L., Giraud, E.J., Uggalla, V.K., Lister, R.M., Clifton, R.S., Glen, A.J., Thirkettle-Watts, D., Van aken, O. and Whelan, J.M. Identification of Regulatory Pathways Controlling Gene Expression of Stress-Responsive Mitochondrial Proteins in Arabidopsis, Plant Physiology, 147: pp 1858-1873 (2008)

Howell, K.A., Narsai, R.N., Carroll, A.J., Ivanova, A., Lohse, M., Usadel, B., Millar, A.H. and Whelan, J.M. Mapping Metabolic and Transcript Temporal Switches during Germination in Rice Highlights Specific Transcription Factors and the Role of RNA Instability in the Germination Process, Plant Physiology, 149: pp 961-980 (2008)

Huang, S., Taylor, K.L., Narsai, R.N., Eubel, H., Whelan, J.M. and Millar, A.H. Experimental Analysis of the Rice Mitochondrial Proteome, Its Biogenesis, and Heterogeneity, Plant Physiology, 149: pp 719 - 734 (2008)

Huang, S., Colmer, T.D. and Millar, A.H. Does anoxia tolerance involve altering the energy currency towards PPi?, Trends in Plant Science, 13:5, pp 221-227 (2008)

Jellicoe, M.M., Nichols, S.J., Callus, B.A., Baker, M.V., Barnard, P.J., Berners-Price, S.J., Whelan, J.M., Yeoh, G.C. and Filipovska, A. Bioenergetic differences selectively sensitize tumorigenic liver progenitor cells to a new gold(I) compound, Carcinogenesis, 29:6, pp 1124-1133 (2008)

Kreuzwieser, J., Hauberg, J., Howell, K.A., Carroll, A.J., Rennenberg, H., Millar, A.H. and Whelan, J.M. Differential Response of Gray Poplar Leaves and Roots Underpins Stress Adaptation during Hypoxia, Plant Physiology, 149: pp 461-473 (2008)

Lee, C.P., Eubel, H., O'Toole, N. and Millar, A.H. Heterogeneity of the Mitochondrial Proteome for Photosynthetic and Non-photosynthetic Arabidopsis Metabolism, Molecular & Cellular Proteomics, 7:7, pp 1297-1316 (2008)

Lister, R., O'Malley, R.C., Tonti-Filippini, J.S., Gregory, B.D., Berry, C.C., Millar, A.H. and Ecker, J.R. Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis, Cell, 133: pp 523-536 (2008)

Meyer, E., Taylor, N.L. and Millar, A.H. Resolving and Identifying Protein Components of Plant Mitochondrial Respiratory Complexes Using Three Dimensions of Gel Electrophoresis, Journal of Proteome Research, 7:2, pp 786-794 (2008)

O'Toole, N.J. and Vakser, I.A. Large-scale characteristics of the energy landscape in protein-protein interactions, PROTEINS: Structure, Function, and Bioinformatics, 71: pp 144-152 (2008)

O'Toole, N.J., Hattori, M., Andres, C., Iida, K., Lurin, C., Schmitz-Linneweber, C., Sugita, M. and Small, I. On the Expansion of the Pentatricopeptide Repeat Gene Family in Plants, Molecular Biology and Evolution, 25:6, pp 1120-1128 (2008)

Pogson, B.J., Woo, N.S., Forster, B. and Small, I. Plastid signalling to the nucleus and beyond, Trends in Plant Science, 13:11, pp 602-609 (2008)

Pracharoenwattana, I. and Smith, S.M. When is a peroxisome not a peroxisome?, Trends in Plant Science, 13:10, pp 522-525 (2008)

Sappl, P.G., Carroll, A.J., Clifton, R.S., Lister, R.M., Whelan, J.M., Millar, A.H. and Singh, K.B. The Arabidopsis glutathione transferase gene family displays complex stress regulation and co-silencing multiple genes results in altered metabolic sensitivity to oxidative stress, The Plant Journal, doi: 10.1111/j.1365-313X.2008.: (2008)

Schmitz-Linneweber, C. and Small, I. Pentatricopeptide repeat proteins: a socket set for organelle gene expression, Trends in Plant Science, 13:12, pp 663-670 (2008)

Tan, K-C., Heazlewood, J.L., Millar, A.H., Thomson, G., Oliver, R.P. and Solomon, P.S. A Signaling-Regulated, Short-Chain Dehydrogenase of Stagonospora nodorum Regulates Asexual Development, Eukaryotic Cell, 7:11, pp 1916-1929 (2008)

Taylor, N.L., Tan, Y.F., Jacoby, R.P. and Millar, A.H. Abiotic environmental stress induced changes in the Arabidopsis thaliana chloroplast, mitochondria and peroxisome proteomes, Journal of Proteomics, 72:3, pp 367-378 (2008)

Weckwerth, W., Baginsky, s., van Wijk, K., Heazlewood, J.H. and Millar, A.H. The Multinational Arabidopsis Steering Subcommittee for Proteomics Assembles the Largest Proteome Database Resource for Plant Systems Biology, Journal of Proteome Research, 7:10, pp 4209-4210 (2008)

Wilson, P.B., Estavillo, G.M., Field, K.J., Pornsiriwong, W., Carroll, A.J., Howell, K.A., Woo, N.S., Lake, J.A., Smith, S.M., Millar, A.H., von Caemmerer, S. and Pogson, B.P. The nucleotidase/phosphatase SAL1 is a negative regulator of drought tolerance in Arabidopsis, The Plant Journal, doi: 10.1111/j.1365-313X.2008.: (2008)

Wiszniewski, A.A.G., Zhou, W., Smith, S.M. and Bussell, J.D. Identification of two Arabidopsis genes encoding a peroxisomal oxidoreductase-like protein and an acyl-CoA synthetase-like protein that are required for responses to pro-auxins, Plant Molecular Biology, 69: pp 503-515 (2008)

Zhang, J., Huang, S., Fosu-Nyarko, J., Dell, B., McNeil, M., Waters, I., Moolhuijzen, P., Conocono, E. and Appels, R. The genome structure of the 1-FEH genes in wheat (Triticum aestivum L.): new markers to track stem carbohydrates and grain filling QTLs in breeding, MOLECULAR BREEDING, 22:3, pp 339-351 (2008)

Zhou, W., Cheng, Y., Yap, A.H.H., Chateigner-Boutin, A., Delannoy, E., Hammani, K., Small, I. and Huang, J. The Arabidopsis gene YS1 encoding a DYW protein is required for editing of rpoB transcripts and the rapid development of chloroplasts during early growth, The Plant Journal, doi: 10.1111/j.1365-313X.2008.: pp doi: 10.1111/j.1365-313X.2008. (2008)

Others

Meyer, E. and Millar, A.H. Isolation of mitochondria from plant cell culture, Methods in Molecular Biology, 2: pp 163-169, USA (2008)